Two complete chloroplast genomes of an endangered orchid species, Pelatantheria scolopendrifolia (Orchidaceae), in Korea

Seon A. Yun; Hyun Deok Son; Hyoung Tak Im; Seung Chul Kim

doi:10.1080/23802359.2018.1437815

Two complete chloroplast genomes of an endangered orchid species, Pelatantheria scolopendrifolia (Orchidaceae), in Korea

Seon A. Yun, Hyun Deok Son, Hyoung Tak Im, Seung Chul Kim

Department of Biological Sciences

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Abstract

We determined the complete chloroplast genome sequence of two individuals of Pelatantheria scolopendrifolia, an endangered orchid species in Korea. The total chloroplast genome size of Mokpo (MG752972) and Naju (MG752973) population was 146,971 bp and 146,848 bp, respectively. The chloroplast genome contained 106 genes, including 72 protein-coding genes, 30 tRNA genes, and four rRNA genes. Variation in gene contents and structures was not found between two individuals. We found truncated or deleted ndh genes in P. scolopendrifolia. Phylogenetic analysis, based on the whole chloroplast genome sequences of 25 species of Orchidaceae, showed that P. scolopendrifolia was most closely related to Gastrochilus fuscopunctatus.

Original language	English
Pages (from-to)	225-226
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	3
Issue number	1
DOIs	https://doi.org/10.1080/23802359.2018.1437815
State	Published - 2 Jan 2018

Keywords

Chloroplast genome
endangered species
Korean peninsula
ndh gene
Pelatantheria scolopendrifolia

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1080/23802359.2018.1437815

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title = "Two complete chloroplast genomes of an endangered orchid species, Pelatantheria scolopendrifolia (Orchidaceae), in Korea",

abstract = "We determined the complete chloroplast genome sequence of two individuals of Pelatantheria scolopendrifolia, an endangered orchid species in Korea. The total chloroplast genome size of Mokpo (MG752972) and Naju (MG752973) population was 146,971 bp and 146,848 bp, respectively. The chloroplast genome contained 106 genes, including 72 protein-coding genes, 30 tRNA genes, and four rRNA genes. Variation in gene contents and structures was not found between two individuals. We found truncated or deleted ndh genes in P. scolopendrifolia. Phylogenetic analysis, based on the whole chloroplast genome sequences of 25 species of Orchidaceae, showed that P. scolopendrifolia was most closely related to Gastrochilus fuscopunctatus.",

keywords = "Chloroplast genome, endangered species, Korean peninsula, ndh gene, Pelatantheria scolopendrifolia",

author = "Yun, \{Seon A.\} and Son, \{Hyun Deok\} and Im, \{Hyoung Tak\} and Kim, \{Seung Chul\}",

note = "Publisher Copyright: {\textcopyright} 2018 The Author(s). Published by Informa UK Limited, trading as Taylor \& Francis Group.",

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doi = "10.1080/23802359.2018.1437815",

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T1 - Two complete chloroplast genomes of an endangered orchid species, Pelatantheria scolopendrifolia (Orchidaceae), in Korea

AU - Yun, Seon A.

AU - Son, Hyun Deok

AU - Im, Hyoung Tak

AU - Kim, Seung Chul

PY - 2018/1/2

Y1 - 2018/1/2

N2 - We determined the complete chloroplast genome sequence of two individuals of Pelatantheria scolopendrifolia, an endangered orchid species in Korea. The total chloroplast genome size of Mokpo (MG752972) and Naju (MG752973) population was 146,971 bp and 146,848 bp, respectively. The chloroplast genome contained 106 genes, including 72 protein-coding genes, 30 tRNA genes, and four rRNA genes. Variation in gene contents and structures was not found between two individuals. We found truncated or deleted ndh genes in P. scolopendrifolia. Phylogenetic analysis, based on the whole chloroplast genome sequences of 25 species of Orchidaceae, showed that P. scolopendrifolia was most closely related to Gastrochilus fuscopunctatus.

AB - We determined the complete chloroplast genome sequence of two individuals of Pelatantheria scolopendrifolia, an endangered orchid species in Korea. The total chloroplast genome size of Mokpo (MG752972) and Naju (MG752973) population was 146,971 bp and 146,848 bp, respectively. The chloroplast genome contained 106 genes, including 72 protein-coding genes, 30 tRNA genes, and four rRNA genes. Variation in gene contents and structures was not found between two individuals. We found truncated or deleted ndh genes in P. scolopendrifolia. Phylogenetic analysis, based on the whole chloroplast genome sequences of 25 species of Orchidaceae, showed that P. scolopendrifolia was most closely related to Gastrochilus fuscopunctatus.

KW - Chloroplast genome

KW - endangered species

KW - Korean peninsula

KW - ndh gene

KW - Pelatantheria scolopendrifolia

UR - https://www.scopus.com/pages/publications/85042142269

U2 - 10.1080/23802359.2018.1437815

DO - 10.1080/23802359.2018.1437815

M3 - Article

AN - SCOPUS:85042142269

SN - 2380-2359

VL - 3

SP - 225

EP - 226

JO - Mitochondrial DNA Part B: Resources

JF - Mitochondrial DNA Part B: Resources

IS - 1

ER -

Two complete chloroplast genomes of an endangered orchid species, Pelatantheria scolopendrifolia (Orchidaceae), in Korea

Abstract

Keywords

UN SDGs

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