The complete mitochondrial genome of the floating goby, Gymnogobius petschiliensis (Perciformes, Gobiidae)

Young Ja Kim; Hee Seok Kweon; Il Chan Kim; Young Mi Lee; Jong Man Kim; Jae Seong Lee

doi:10.1016/s1016-8478(23)13065-2

The complete mitochondrial genome of the floating goby, Gymnogobius petschiliensis (Perciformes, Gobiidae)

Young Ja Kim
, Hee Seok Kweon
, Il Chan Kim
, Young Mi Lee
, Jong Man Kim
, Jae Seong Lee

Research output: Contribution to journal › Article › peer-review

44 Scopus citations

Abstract

We isolated floating goby Gymnogobius petschiliensis mitochondrial DNA by long-polymerase chain reaction (Long-PCR) with conserved primers, and sequenced the mitogenome by primer walking using flanking sequences. The G. petschiliensis mitochondrial DNA has 16,424 bp and its structural organization is similar to the mitochondrial DNAs of other fish, and mammals. We analyzed phylogenetic relationships derived from the mitochondrial cytochrome b gene. We report the basic characteristics of the G. petschiliensis mitochondrial genome including its structural organization and the base composition of the rRNAs, tRNAs and protein-coding genes as well as characteristics of tRNAs. These features are used to analyze phylogenetic relationship among the 60 species of the genus Gymnogobius.

Original language	English
Pages (from-to)	446-453
Number of pages	8
Journal	Molecules and Cells
Volume	17
Issue number	3
DOIs	https://doi.org/10.1016/s1016-8478(23)13065-2
State	Published - 30 Jun 2004
Externally published	Yes

Keywords

Fish
Gymnogobius petschiliensis
Long-polymerase chain reaction
Mitochondrial genome
Sequencing

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10.1016/s1016-8478(23)13065-2

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title = "The complete mitochondrial genome of the floating goby, Gymnogobius petschiliensis (Perciformes, Gobiidae)",

abstract = "We isolated floating goby Gymnogobius petschiliensis mitochondrial DNA by long-polymerase chain reaction (Long-PCR) with conserved primers, and sequenced the mitogenome by primer walking using flanking sequences. The G. petschiliensis mitochondrial DNA has 16,424 bp and its structural organization is similar to the mitochondrial DNAs of other fish, and mammals. We analyzed phylogenetic relationships derived from the mitochondrial cytochrome b gene. We report the basic characteristics of the G. petschiliensis mitochondrial genome including its structural organization and the base composition of the rRNAs, tRNAs and protein-coding genes as well as characteristics of tRNAs. These features are used to analyze phylogenetic relationship among the 60 species of the genus Gymnogobius.",

keywords = "Fish, Gymnogobius petschiliensis, Long-polymerase chain reaction, Mitochondrial genome, Sequencing",

author = "Kim, \{Young Ja\} and Kweon, \{Hee Seok\} and Kim, \{Il Chan\} and Lee, \{Young Mi\} and Kim, \{Jong Man\} and Lee, \{Jae Seong\}",

year = "2004",

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doi = "10.1016/s1016-8478(23)13065-2",

language = "English",

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T1 - The complete mitochondrial genome of the floating goby, Gymnogobius petschiliensis (Perciformes, Gobiidae)

AU - Kim, Young Ja

AU - Kweon, Hee Seok

AU - Kim, Il Chan

AU - Lee, Young Mi

AU - Kim, Jong Man

AU - Lee, Jae Seong

PY - 2004/6/30

Y1 - 2004/6/30

N2 - We isolated floating goby Gymnogobius petschiliensis mitochondrial DNA by long-polymerase chain reaction (Long-PCR) with conserved primers, and sequenced the mitogenome by primer walking using flanking sequences. The G. petschiliensis mitochondrial DNA has 16,424 bp and its structural organization is similar to the mitochondrial DNAs of other fish, and mammals. We analyzed phylogenetic relationships derived from the mitochondrial cytochrome b gene. We report the basic characteristics of the G. petschiliensis mitochondrial genome including its structural organization and the base composition of the rRNAs, tRNAs and protein-coding genes as well as characteristics of tRNAs. These features are used to analyze phylogenetic relationship among the 60 species of the genus Gymnogobius.

AB - We isolated floating goby Gymnogobius petschiliensis mitochondrial DNA by long-polymerase chain reaction (Long-PCR) with conserved primers, and sequenced the mitogenome by primer walking using flanking sequences. The G. petschiliensis mitochondrial DNA has 16,424 bp and its structural organization is similar to the mitochondrial DNAs of other fish, and mammals. We analyzed phylogenetic relationships derived from the mitochondrial cytochrome b gene. We report the basic characteristics of the G. petschiliensis mitochondrial genome including its structural organization and the base composition of the rRNAs, tRNAs and protein-coding genes as well as characteristics of tRNAs. These features are used to analyze phylogenetic relationship among the 60 species of the genus Gymnogobius.

KW - Fish

KW - Gymnogobius petschiliensis

KW - Long-polymerase chain reaction

KW - Mitochondrial genome

KW - Sequencing

UR - https://www.scopus.com/pages/publications/3042809186

U2 - 10.1016/s1016-8478(23)13065-2

DO - 10.1016/s1016-8478(23)13065-2

M3 - Article

C2 - 15232219

AN - SCOPUS:3042809186

SN - 1016-8478

VL - 17

SP - 446

EP - 453

JO - Molecules and Cells

JF - Molecules and Cells

IS - 3

ER -

The complete mitochondrial genome of the floating goby, Gymnogobius petschiliensis (Perciformes, Gobiidae)

Abstract

Keywords

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