The complete chloroplast genome sequence of limestone endemic, Zabelia tyaihyoni (Caprifoliaceae), in Korea

Woong Lee; Jin Suk Youn; Seung Chul Kim; Jae Hong Pak

doi:10.1080/23802359.2020.1756491

The complete chloroplast genome sequence of limestone endemic, Zabelia tyaihyoni (Caprifoliaceae), in Korea

Woong Lee, Jin Suk Youn, Seung Chul Kim, Jae Hong Pak

Department of Biological Sciences

Kyungpook National University

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

The first complete chloroplast genome sequence of Korean limestone endemic, Zabelia tyaihyoni, was reported in this study. The plastome size was 156,449 bp in total length, with one large single copy (LSC; 89,242 bp), one small single copy (SSC; 17,331 bp), and two inverted repeat (IR) regions (IR_a and IR_b, each with 24,938 bp). The overall GC content was 38.3% and the genome contained 128 genes, including 83 protein-coding with 3 pseudogenes (two ycf2 and accD), 37 transfer RNA and 8 ribosomal RNA genes. Phylogenetic analysis of 21 representative plastomes within the Caprifoliaceae suggests that Zabelia formed a monophyletic clade with 100% bootstrap value and Z. tyaihyoni was closely related to Z. biflora and Z. corymbosa.

Original language	English
Pages (from-to)	1947-1948
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	5
Issue number	2
DOIs	https://doi.org/10.1080/23802359.2020.1756491
State	Published - 2 Apr 2020

Keywords

Caprifoliaceae
chloroplast genome
limestone endemic
Zabelia tyaihyoni

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10.1080/23802359.2020.1756491

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title = "The complete chloroplast genome sequence of limestone endemic, Zabelia tyaihyoni (Caprifoliaceae), in Korea",

abstract = "The first complete chloroplast genome sequence of Korean limestone endemic, Zabelia tyaihyoni, was reported in this study. The plastome size was 156,449 bp in total length, with one large single copy (LSC; 89,242 bp), one small single copy (SSC; 17,331 bp), and two inverted repeat (IR) regions (IRa and IRb, each with 24,938 bp). The overall GC content was 38.3\% and the genome contained 128 genes, including 83 protein-coding with 3 pseudogenes (two ycf2 and accD), 37 transfer RNA and 8 ribosomal RNA genes. Phylogenetic analysis of 21 representative plastomes within the Caprifoliaceae suggests that Zabelia formed a monophyletic clade with 100\% bootstrap value and Z. tyaihyoni was closely related to Z. biflora and Z. corymbosa.",

keywords = "Caprifoliaceae, chloroplast genome, limestone endemic, Zabelia tyaihyoni",

author = "Woong Lee and Youn, \{Jin Suk\} and Kim, \{Seung Chul\} and Pak, \{Jae Hong\}",

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doi = "10.1080/23802359.2020.1756491",

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T1 - The complete chloroplast genome sequence of limestone endemic, Zabelia tyaihyoni (Caprifoliaceae), in Korea

AU - Lee, Woong

AU - Youn, Jin Suk

AU - Kim, Seung Chul

AU - Pak, Jae Hong

PY - 2020/4/2

Y1 - 2020/4/2

N2 - The first complete chloroplast genome sequence of Korean limestone endemic, Zabelia tyaihyoni, was reported in this study. The plastome size was 156,449 bp in total length, with one large single copy (LSC; 89,242 bp), one small single copy (SSC; 17,331 bp), and two inverted repeat (IR) regions (IRa and IRb, each with 24,938 bp). The overall GC content was 38.3% and the genome contained 128 genes, including 83 protein-coding with 3 pseudogenes (two ycf2 and accD), 37 transfer RNA and 8 ribosomal RNA genes. Phylogenetic analysis of 21 representative plastomes within the Caprifoliaceae suggests that Zabelia formed a monophyletic clade with 100% bootstrap value and Z. tyaihyoni was closely related to Z. biflora and Z. corymbosa.

AB - The first complete chloroplast genome sequence of Korean limestone endemic, Zabelia tyaihyoni, was reported in this study. The plastome size was 156,449 bp in total length, with one large single copy (LSC; 89,242 bp), one small single copy (SSC; 17,331 bp), and two inverted repeat (IR) regions (IRa and IRb, each with 24,938 bp). The overall GC content was 38.3% and the genome contained 128 genes, including 83 protein-coding with 3 pseudogenes (two ycf2 and accD), 37 transfer RNA and 8 ribosomal RNA genes. Phylogenetic analysis of 21 representative plastomes within the Caprifoliaceae suggests that Zabelia formed a monophyletic clade with 100% bootstrap value and Z. tyaihyoni was closely related to Z. biflora and Z. corymbosa.

KW - Caprifoliaceae

KW - chloroplast genome

KW - limestone endemic

KW - Zabelia tyaihyoni

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DO - 10.1080/23802359.2020.1756491

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SN - 2380-2359

VL - 5

SP - 1947

EP - 1948

JO - Mitochondrial DNA Part B: Resources

JF - Mitochondrial DNA Part B: Resources

IS - 2

ER -

The complete chloroplast genome sequence of limestone endemic, Zabelia tyaihyoni (Caprifoliaceae), in Korea

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Keywords

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