TY - JOUR
T1 - Sphingomicrobium aestuariivivum sp. nov., isolated from a tidal flat
AU - Park, Sooyeon
AU - Park, Ji Min
AU - Joo, Eun Sun
AU - Won, Sung Min
AU - Kim, Myung Kyum
AU - Yoon, Jung Hoon
N1 - Publisher Copyright:
© 2015 IUMS.
PY - 2015/8/1
Y1 - 2015/8/1
N2 - A Gram-stain-negative, aerobic, non-spore-forming, non-flagellated and coccoid, ovoid or rodshaped bacterial strain, designated AH-M8T, was isolated from a tidal flat sediment collected from Aphae Island in the south-western sea, South Korea. Strain AH-M8T grew optimally at 35 8C, at pH 7.0–8.0 and in the presence of 2.0–3.0 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain AH-M8T belonged to the genus Sphingomicrobium, clustering with the type strain of Sphingomicrobium astaxanthinifaciens, with which it shared 99.0 % 16S rRNA gene sequence similarity. Sequence similarities to the type strains of other species of the genus Sphingomicrobium were 95.4–96.0 %. Strain AH-M8T contained Q-10 as the predominant ubiquinone and C18:1ω7c, summed feature 3 (C16:1ω7c and/or C16:1ω6c) and C16:0 as the major fatty acids. The major polar lipids of strain AH-M8T were phosphatidylglycerol, phosphatidylethanolamine, sphingoglycolipid and one unidentified glycolipid. The major polyamine is triamine symhomospermidine. The DNA G+C content of strain AH-M8T was 66.7 mol% and its mean DNA–DNA relatedness value with S. astaxanthinifaciens JCM 18551T was 21 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain AH-M8T is separated from other species of the genus Sphingomicrobium. On the basis of the data presented, strain AH-M8T is considered to represent a novel species of the genus Sphingomicrobium, for which the name Sphingomicrobium aestuariivivum sp. nov. is proposed. The type strain is AH-M8T (5KCTC 42286T5NBRC 110678T).
AB - A Gram-stain-negative, aerobic, non-spore-forming, non-flagellated and coccoid, ovoid or rodshaped bacterial strain, designated AH-M8T, was isolated from a tidal flat sediment collected from Aphae Island in the south-western sea, South Korea. Strain AH-M8T grew optimally at 35 8C, at pH 7.0–8.0 and in the presence of 2.0–3.0 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain AH-M8T belonged to the genus Sphingomicrobium, clustering with the type strain of Sphingomicrobium astaxanthinifaciens, with which it shared 99.0 % 16S rRNA gene sequence similarity. Sequence similarities to the type strains of other species of the genus Sphingomicrobium were 95.4–96.0 %. Strain AH-M8T contained Q-10 as the predominant ubiquinone and C18:1ω7c, summed feature 3 (C16:1ω7c and/or C16:1ω6c) and C16:0 as the major fatty acids. The major polar lipids of strain AH-M8T were phosphatidylglycerol, phosphatidylethanolamine, sphingoglycolipid and one unidentified glycolipid. The major polyamine is triamine symhomospermidine. The DNA G+C content of strain AH-M8T was 66.7 mol% and its mean DNA–DNA relatedness value with S. astaxanthinifaciens JCM 18551T was 21 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain AH-M8T is separated from other species of the genus Sphingomicrobium. On the basis of the data presented, strain AH-M8T is considered to represent a novel species of the genus Sphingomicrobium, for which the name Sphingomicrobium aestuariivivum sp. nov. is proposed. The type strain is AH-M8T (5KCTC 42286T5NBRC 110678T).
UR - https://www.scopus.com/pages/publications/84941086158
U2 - 10.1099/ijs.0.000320
DO - 10.1099/ijs.0.000320
M3 - Article
C2 - 25964515
AN - SCOPUS:84941086158
SN - 1466-5026
VL - 65
SP - 2678
EP - 2683
JO - International Journal of Systematic and Evolutionary Microbiology
JF - International Journal of Systematic and Evolutionary Microbiology
IS - 8
ER -