Snuella sedimenti sp. nov., isolated from marine sediment

Jong Hwa Kim; Veeraya Weerawongwiwat; Jung Hoon Yoon; Jung Sook Lee; Ampaitip Sukhoom; Wonyong Kim

doi:10.1007/s00203-021-02528-8

Snuella sedimenti sp. nov., isolated from marine sediment

Jong Hwa Kim
, Veeraya Weerawongwiwat
, Jung Hoon Yoon
, Jung Sook Lee
, Ampaitip Sukhoom
, Wonyong Kim

Department of Food Science and Biotechnology

Chung-Ang University
Korea Research Institute of Bioscience and Biotechnology
Prince of Songkla University

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Abstract

A Gram stain-negative, aerobic, motile by gliding, rod-shaped bacterial strain CAU 1569^T was isolated from marine sediment on Shido Island in Incheon. It grew at 20–37 °C (optimum, 30 °C), pH 6.0–9.0 (optimum, 7.0), 2–6% NaCl (w/v) (optimum, 2%). Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CAU 1569^T formed a distinct lineage with only the type strain of Snuella. Strain CAU 1569^T showed high similarity to S. lapsa KACC 14152^T (95.8%), Mariniflexile gromovii KMM KCTC 12570^T, Aestuariibaculum marinum KCTC 52521^T (95.4%), A. suncheonense KACC 16186^T (94.6%) and Yeosuana aromativorans KCCM 42019^T (94.4%). The genome contained 57 contigs, 3,437 protein-coding gene, 3 rRNAs (5, 16, and 23S), 43 tRNAs, and with a 35.7 mol% G + C content. The DDH value between strain CAU 1569^T and S. lapsa KACC 14152^T was 39.4 ± 0.6%. The only isoprenoid quinone was menaquinone 6 (MK-6). The major fatty acids were iso-C_15:0, C_15:1-iso G, and C_17:0 iso 3-OH. Strain CAU 1569^T contained diphosphatidylglycerol, aminoglycolipid, unidentified aminolipid, and three unidentified lipids. Based on phylogenetic, genomic, physiologic, and chemotaxonomic characterizations, strain CAU 1569^T represents a novel Snuella species, which the name Snuella sedimenti sp. nov. is proposed. The type of strain is CAU 1569^T (= KCTC 82409^T = MCCC 1K05670^T).

Original language	English
Pages (from-to)	5437-5443
Number of pages	7
Journal	Archives of Microbiology
Volume	203
Issue number	9
DOIs	https://doi.org/10.1007/s00203-021-02528-8
State	Published - Nov 2021

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 7 Affordable and Clean Energy
SDG 9 Industry, Innovation, and Infrastructure
SDG 12 Responsible Consumption and Production

Keywords

Flavobacteriaceae
Marine sediment
Snuella sedimenti sp. nov

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10.1007/s00203-021-02528-8

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@article{8cc26d2b45714842abf88ee8cefd5a96,

title = "Snuella sedimenti sp. nov., isolated from marine sediment",

abstract = "A Gram stain-negative, aerobic, motile by gliding, rod-shaped bacterial strain CAU 1569T was isolated from marine sediment on Shido Island in Incheon. It grew at 20–37 °C (optimum, 30 °C), pH 6.0–9.0 (optimum, 7.0), 2–6\% NaCl (w/v) (optimum, 2\%). Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CAU 1569T formed a distinct lineage with only the type strain of Snuella. Strain CAU 1569T showed high similarity to S. lapsa KACC 14152T (95.8\%), Mariniflexile gromovii KMM KCTC 12570T, Aestuariibaculum marinum KCTC 52521T (95.4\%), A. suncheonense KACC 16186T (94.6\%) and Yeosuana aromativorans KCCM 42019T (94.4\%). The genome contained 57 contigs, 3,437 protein-coding gene, 3 rRNAs (5, 16, and 23S), 43 tRNAs, and with a 35.7 mol\% G + C content. The DDH value between strain CAU 1569T and S. lapsa KACC 14152T was 39.4 ± 0.6\%. The only isoprenoid quinone was menaquinone 6 (MK-6). The major fatty acids were iso-C15:0, C15:1-iso G, and C17:0 iso 3-OH. Strain CAU 1569T contained diphosphatidylglycerol, aminoglycolipid, unidentified aminolipid, and three unidentified lipids. Based on phylogenetic, genomic, physiologic, and chemotaxonomic characterizations, strain CAU 1569T represents a novel Snuella species, which the name Snuella sedimenti sp. nov. is proposed. The type of strain is CAU 1569T (= KCTC 82409T = MCCC 1K05670T).",

keywords = "Flavobacteriaceae, Marine sediment, Snuella sedimenti sp. nov",

author = "Kim, \{Jong Hwa\} and Veeraya Weerawongwiwat and Yoon, \{Jung Hoon\} and Lee, \{Jung Sook\} and Ampaitip Sukhoom and Wonyong Kim",

note = "Publisher Copyright: {\textcopyright} 2021, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.",

year = "2021",

month = nov,

doi = "10.1007/s00203-021-02528-8",

language = "English",

volume = "203",

pages = "5437--5443",

journal = "Archives of Microbiology",

issn = "0302-8933",

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TY - JOUR

T1 - Snuella sedimenti sp. nov., isolated from marine sediment

AU - Kim, Jong Hwa

AU - Weerawongwiwat, Veeraya

AU - Yoon, Jung Hoon

AU - Lee, Jung Sook

AU - Sukhoom, Ampaitip

AU - Kim, Wonyong

PY - 2021/11

Y1 - 2021/11

N2 - A Gram stain-negative, aerobic, motile by gliding, rod-shaped bacterial strain CAU 1569T was isolated from marine sediment on Shido Island in Incheon. It grew at 20–37 °C (optimum, 30 °C), pH 6.0–9.0 (optimum, 7.0), 2–6% NaCl (w/v) (optimum, 2%). Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CAU 1569T formed a distinct lineage with only the type strain of Snuella. Strain CAU 1569T showed high similarity to S. lapsa KACC 14152T (95.8%), Mariniflexile gromovii KMM KCTC 12570T, Aestuariibaculum marinum KCTC 52521T (95.4%), A. suncheonense KACC 16186T (94.6%) and Yeosuana aromativorans KCCM 42019T (94.4%). The genome contained 57 contigs, 3,437 protein-coding gene, 3 rRNAs (5, 16, and 23S), 43 tRNAs, and with a 35.7 mol% G + C content. The DDH value between strain CAU 1569T and S. lapsa KACC 14152T was 39.4 ± 0.6%. The only isoprenoid quinone was menaquinone 6 (MK-6). The major fatty acids were iso-C15:0, C15:1-iso G, and C17:0 iso 3-OH. Strain CAU 1569T contained diphosphatidylglycerol, aminoglycolipid, unidentified aminolipid, and three unidentified lipids. Based on phylogenetic, genomic, physiologic, and chemotaxonomic characterizations, strain CAU 1569T represents a novel Snuella species, which the name Snuella sedimenti sp. nov. is proposed. The type of strain is CAU 1569T (= KCTC 82409T = MCCC 1K05670T).

AB - A Gram stain-negative, aerobic, motile by gliding, rod-shaped bacterial strain CAU 1569T was isolated from marine sediment on Shido Island in Incheon. It grew at 20–37 °C (optimum, 30 °C), pH 6.0–9.0 (optimum, 7.0), 2–6% NaCl (w/v) (optimum, 2%). Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain CAU 1569T formed a distinct lineage with only the type strain of Snuella. Strain CAU 1569T showed high similarity to S. lapsa KACC 14152T (95.8%), Mariniflexile gromovii KMM KCTC 12570T, Aestuariibaculum marinum KCTC 52521T (95.4%), A. suncheonense KACC 16186T (94.6%) and Yeosuana aromativorans KCCM 42019T (94.4%). The genome contained 57 contigs, 3,437 protein-coding gene, 3 rRNAs (5, 16, and 23S), 43 tRNAs, and with a 35.7 mol% G + C content. The DDH value between strain CAU 1569T and S. lapsa KACC 14152T was 39.4 ± 0.6%. The only isoprenoid quinone was menaquinone 6 (MK-6). The major fatty acids were iso-C15:0, C15:1-iso G, and C17:0 iso 3-OH. Strain CAU 1569T contained diphosphatidylglycerol, aminoglycolipid, unidentified aminolipid, and three unidentified lipids. Based on phylogenetic, genomic, physiologic, and chemotaxonomic characterizations, strain CAU 1569T represents a novel Snuella species, which the name Snuella sedimenti sp. nov. is proposed. The type of strain is CAU 1569T (= KCTC 82409T = MCCC 1K05670T).

KW - Flavobacteriaceae

KW - Marine sediment

KW - Snuella sedimenti sp. nov

UR - https://www.scopus.com/pages/publications/85113162032

U2 - 10.1007/s00203-021-02528-8

DO - 10.1007/s00203-021-02528-8

M3 - Article

C2 - 34405260

AN - SCOPUS:85113162032

SN - 0302-8933

VL - 203

SP - 5437

EP - 5443

JO - Archives of Microbiology

JF - Archives of Microbiology

IS - 9

ER -

Snuella sedimenti sp. nov., isolated from marine sediment

Abstract

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Keywords

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