TY - JOUR
T1 - Simiduia aestuariiviva sp. nov., a gammaproteobacterium isolated from a tidal flat sediment
AU - Park, Sooyeon
AU - Kim, Soo In
AU - Kang, Chul Hyung
AU - Park, Ji Min
AU - Yoon, Jung Hoon
N1 - Publisher Copyright:
© 2014, Springer International Publishing Switzerland.
PY - 2014/10/7
Y1 - 2014/10/7
N2 - A Gram-stain negative, aerobic, motile and rod-shaped bacterial strain, designated J-MY2T, was isolated from a tidal flat sediment of the South Sea, South Korea. Strain J-MY2T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain J-MY2T forms a cluster with the type strains of Simiduia species. Strain J-MY2T exhibited 16S rRNA gene sequence similarity values of 97.62–98.77 % to the type strains of four Simiduia species and of <92.95 % sequence similarity to the type strains of the other recognized species. Strain J-MY2T was found to contain Q-8 as the predominant ubiquinone and summed feature 3 (C16:1ω7c and/or C16:1ω6c), C16:0, C18:1ω7c and C17:1ω8c as the major fatty acids. The major polar lipids of strain J-MY2T were identified as phosphatidylethanolamine, phosphatidylglycerol, three unidentified glycolipids and one unidentified lipid. The DNA G+C content of strain J-MY2T was determined to be 54.8 mol% and its mean DNA–DNA relatedness values with the type strains of the four Simiduia species were in the range 21–34 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain J-MY2T is separated from other Simiduia species. On the basis of the data presented, strain J-MY2T is considered to represent a novel species of the genus Simiduia, for which the name Simiduiaaestuariiviva sp. nov. is proposed. The type strain is J-MY2T ( = KCTC 42073T = CECT 8571T).
AB - A Gram-stain negative, aerobic, motile and rod-shaped bacterial strain, designated J-MY2T, was isolated from a tidal flat sediment of the South Sea, South Korea. Strain J-MY2T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain J-MY2T forms a cluster with the type strains of Simiduia species. Strain J-MY2T exhibited 16S rRNA gene sequence similarity values of 97.62–98.77 % to the type strains of four Simiduia species and of <92.95 % sequence similarity to the type strains of the other recognized species. Strain J-MY2T was found to contain Q-8 as the predominant ubiquinone and summed feature 3 (C16:1ω7c and/or C16:1ω6c), C16:0, C18:1ω7c and C17:1ω8c as the major fatty acids. The major polar lipids of strain J-MY2T were identified as phosphatidylethanolamine, phosphatidylglycerol, three unidentified glycolipids and one unidentified lipid. The DNA G+C content of strain J-MY2T was determined to be 54.8 mol% and its mean DNA–DNA relatedness values with the type strains of the four Simiduia species were in the range 21–34 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain J-MY2T is separated from other Simiduia species. On the basis of the data presented, strain J-MY2T is considered to represent a novel species of the genus Simiduia, for which the name Simiduiaaestuariiviva sp. nov. is proposed. The type strain is J-MY2T ( = KCTC 42073T = CECT 8571T).
KW - Novel species
KW - Polyphasic taxonomy
KW - Simiduiaaestuariiviva sp. nov
KW - Tidal flat
UR - https://www.scopus.com/pages/publications/84909996503
U2 - 10.1007/s10482-014-0262-9
DO - 10.1007/s10482-014-0262-9
M3 - Article
C2 - 25149855
AN - SCOPUS:84909996503
SN - 0003-6072
VL - 106
SP - 927
EP - 934
JO - Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology
JF - Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology
IS - 5
ER -