Polyphasic taxonomic analysis of Nitratireductor arenosus sp. nov., isolated from sea sand

Jihye Baek, Jong Hwa Kim, Jiseon Jeong, Jung Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim

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2 Scopus citations

Abstract

A novel proteobacterial bacterium, designated strain CAU 1489T, was isolated from Jeju Island, Republic of Korea. Cells were strictly anaerobic, Gram stain-negative, cream-pigmented, non-spore-forming, motile and short rod-shaped. Strain CAU 1489T exhibited the highest 16S rRNA gene sequence similarity (98.2%) to Nitratireductor mangrovi SY7T. Multilocus sequence analysis of 16S rRNA and four housekeeping genes (rpoB, rpoC, gyrB and dnaK) indicated that CAU 1489T represents a distinct branch within Nitratireductor. The whole genome was 4.8 Mb with a G + C content of 64.7 mol%, including protein-coding genes related to the function terms amino acids and derivatives, nucleotides and nucleosides, protein metabolism, carbohydrates and cofactors, vitamins, prosthetic groups and pigments. The major fatty acids were 11-methyl C18:1 ω7c, cyclo- C19:0 ω8c, iso-C17:0 and summed feature 8 (C18:1 ω6c and/or C18:1 ω7c), and the predominant respiratory quinone was Q-10. The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and two unidentified phospholipids. Digital DNA-DNA hybridization and average nucleotide identity values were 19.4-22.0% and 72.4-79.1%, respectively. On the basis of taxonomic characterization, strain CAU 1489T constitutes a novel species, for which the name Nitratireductor arenosus sp. nov. is proposed. The type strain is CAU 1489T (= KCTC 62997T = NBRC 113694T).

Original languageEnglish
Article number6_fnaa104
JournalFEMS Microbiology Letters
Volume367
Issue number13
DOIs
StatePublished - 1 Jun 2020

Keywords

  • 16S rRNA gene sequence
  • Gram stain
  • Nitratireductor arenosus
  • Phyllobacteriaceae
  • Sea sand

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