Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco

Seon Hee Kim; José A. Mejías; Seung Chul Kim

doi:10.1080/23802359.2018.1544865

Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco

Seon Hee Kim, José A. Mejías, Seung Chul Kim

Department of Biological Sciences

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

The complete chloroplast genome sequences of newly discovered cliff-dwelling species of Sonchus, S. boulosii, were reported in this study. The S. boulosii plastome was 152,016 bp long, with the large single copy (LSC) region of 83,988 bp, the small single copy (SSC) region of 18,566 bp, and two inverted repeat (IR) regions of 24,731 bp. The plastome contained 130 genes, including 88 protein-coding, six ribosomal RNA, and 36 transfer RNA genes. The overall GC content was 31.2%. Phylogenetic analysis of 12 representative plastomes within the order Cichorieae suggests that S. boulosii is closely related to S. oleraceus.

Original language	English
Pages (from-to)	164-165
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	4
Issue number	1
DOIs	https://doi.org/10.1080/23802359.2018.1544865
State	Published - 2 Jan 2019

Keywords

Asteraceae
Chloroplast genome
Cichorieae
Morocco
Sonchus boulosii

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10.1080/23802359.2018.1544865

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title = "Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco",

abstract = "The complete chloroplast genome sequences of newly discovered cliff-dwelling species of Sonchus, S. boulosii, were reported in this study. The S. boulosii plastome was 152,016 bp long, with the large single copy (LSC) region of 83,988 bp, the small single copy (SSC) region of 18,566 bp, and two inverted repeat (IR) regions of 24,731 bp. The plastome contained 130 genes, including 88 protein-coding, six ribosomal RNA, and 36 transfer RNA genes. The overall GC content was 31.2\%. Phylogenetic analysis of 12 representative plastomes within the order Cichorieae suggests that S. boulosii is closely related to S. oleraceus.",

keywords = "Asteraceae, Chloroplast genome, Cichorieae, Morocco, Sonchus boulosii",

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doi = "10.1080/23802359.2018.1544865",

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T1 - Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco

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AU - Mejías, José A.

AU - Kim, Seung Chul

PY - 2019/1/2

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AB - The complete chloroplast genome sequences of newly discovered cliff-dwelling species of Sonchus, S. boulosii, were reported in this study. The S. boulosii plastome was 152,016 bp long, with the large single copy (LSC) region of 83,988 bp, the small single copy (SSC) region of 18,566 bp, and two inverted repeat (IR) regions of 24,731 bp. The plastome contained 130 genes, including 88 protein-coding, six ribosomal RNA, and 36 transfer RNA genes. The overall GC content was 31.2%. Phylogenetic analysis of 12 representative plastomes within the order Cichorieae suggests that S. boulosii is closely related to S. oleraceus.

KW - Asteraceae

KW - Chloroplast genome

KW - Cichorieae

KW - Morocco

KW - Sonchus boulosii

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DO - 10.1080/23802359.2018.1544865

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Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco

Abstract

Keywords

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