Gracilimonas sediminicola sp. nov., a moderately halotolerant bacterium isolated from seaweed sediment collected in the East Sea, Republic of Korea

Yunjeong Lee, Veeraya Weerawongwiwat, Jong Hwa Kim, Jung Hoon Yoon, Jung Sook Lee, Ampaitip Sukhoom, Wonyong Kim

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3 Scopus citations

Abstract

A Gram-stain-negative, aerobic, rod-shaped bacterium, designated as strain CAU 1638T, was isolated from seaweed sediment collected in the Republic of Korea. The cells of strain CAU 1638T grew at 25–37 °C (optimum, 30 °C), at pH 6.0–7.0 (optimum, pH 6.5) and in the presence of 0–10% NaCl (optimum, 2 %). The cells were positive for catalase and oxidase and did not hydrolyse starch and casein. Strain CAU 1638T was most closely related to Gracilimonas amylolytica KCTC 52885T (97.7 %), followed by Gracilimonas halophila KCTC 52042T (97.4 %), Gracilimonas rosea KCCM 90206T (97.2 %), Gracili-monas tropica KCCM 90063T and Gracilimonas mengyeensis DSM 21985T (97.1 %), as revealed by 16S rRNA gene sequenc-ing. MK-7 was the major isoprenoid quinone, and iso-C15: 0 and C15: 1 ω6c were the major fatty acids. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, two unidentified lipids, two unidentified glycolipids and three unidentified phospholipids. The G+C content of the genome was 44.2 mol%. The average nucleotide identity and digital DNA–DNA hybridization values between strain CAU 1638T and the reference strains were 73.1–73.9 % and 18.9–21.5 %, respectively. Based on its phylogenetic, phenotypic and chemotaxonomic features, strain CAU 1638T represents a novel species of the genus Gracilimonas, for which the name Gracilimonas sediminicola sp. nov. is proposed. The type strain is CAU 1638T (=KCTC 82454T =MCCC 1K06087T ).

Original languageEnglish
Article number005912
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume73
Issue number5
DOIs
StatePublished - 2023

Keywords

  • 16S rRNA gene sequence
  • Balneolaceae
  • Balneolia
  • genome sequencing
  • Gracilimonas sediminicola
  • seaweed sediment

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