TY - JOUR
T1 - Advancing genome-based precision medicine
T2 - A review on machine learning applications for rare genetic disorders
AU - Abbas, Syed Raza
AU - Abbas, Zeeshan
AU - Zahir, Arifa
AU - Lee, Seung Won
N1 - Publisher Copyright:
© 2025 Oxford University Press. All rights reserved.
PY - 2025/7/1
Y1 - 2025/7/1
N2 - Precision medicine tailors medical procedures to individual genetic overviews and offers transformative solutions for rare genetic conditions. Machine learning (ML) has enhanced genome-based precision medicine (GBPM) by enabling accurate diagnoses, customized treatments, and risk assessments. ML tools, including deep learning and ensemble methods, process high-dimensional genomic data and reveal discoveries in rare diseases. This review analyzes the ML applications in GBPM, emphasizing its role in disease classification, therapeutic optimization, and biomarker discovery. Key challenges, such as computational complexity, data scarcity, and ethical concerns, are discussed alongside advancements such as hybrid ML models and real-Time genomic analysis. Security issues, including data breaches and ethical challenges, are addressed. This review identifies future directions, emphasizing the need for comprehensible ML models, increasing data-sharing frameworks, and global collaborations. By integrating the current research, this study provides a comprehensive perspective on the use of ML for rare genetic disorders, paving the way for transformative advancements in precision medicine.
AB - Precision medicine tailors medical procedures to individual genetic overviews and offers transformative solutions for rare genetic conditions. Machine learning (ML) has enhanced genome-based precision medicine (GBPM) by enabling accurate diagnoses, customized treatments, and risk assessments. ML tools, including deep learning and ensemble methods, process high-dimensional genomic data and reveal discoveries in rare diseases. This review analyzes the ML applications in GBPM, emphasizing its role in disease classification, therapeutic optimization, and biomarker discovery. Key challenges, such as computational complexity, data scarcity, and ethical concerns, are discussed alongside advancements such as hybrid ML models and real-Time genomic analysis. Security issues, including data breaches and ethical challenges, are addressed. This review identifies future directions, emphasizing the need for comprehensible ML models, increasing data-sharing frameworks, and global collaborations. By integrating the current research, this study provides a comprehensive perspective on the use of ML for rare genetic disorders, paving the way for transformative advancements in precision medicine.
KW - artificial intelligence
KW - deep learning
KW - explainable AI
KW - GBPM
KW - healthcare
KW - internet of things
KW - machine learning
UR - https://www.scopus.com/pages/publications/105011088694
U2 - 10.1093/bib/bbaf329
DO - 10.1093/bib/bbaf329
M3 - Review article
C2 - 40668553
AN - SCOPUS:105011088694
SN - 1467-5463
VL - 26
JO - Briefings in Bioinformatics
JF - Briefings in Bioinformatics
IS - 4
M1 - bbaf329
ER -