@inbook{a8a40219e72a4bd1b17f07412e81d703,
title = "A practical guide to molecular dynamics simulations of DNA origami systems",
abstract = "The DNA origami method exploits the self-assembly property of nucleic acids to build diverse nanoscale systems. The all-atom molecular dynamics (MD) method has emerged as a powerful computational tool for atomic-resolution characterization of the in situ structure and physical properties of DNA origami objects. This chapter provides step-by-step instructions for building atomic-scale models of DNA origami systems, using the MD method to simulate the models, and performing basic analyses of the resulting MD trajectories.",
keywords = "Bionanotechnology, Computer simulations, DNA nanotechnology, DNA origami, Molecular dynamics",
author = "Jejoong Yoo and Li, \{Chen Yu\} and Slone, \{Scott Michael\} and Christopher Maffeo and Aleksei Aksimentiev",
note = "Publisher Copyright: {\textcopyright} 2018, Springer Science+Business Media, LLC, part of Springer Nature.",
year = "2018",
doi = "10.1007/978-1-4939-8582-1\_15",
language = "English",
series = "Methods in Molecular Biology",
publisher = "Humana Press Inc.",
pages = "209--229",
booktitle = "Methods in Molecular Biology",
}